Package: phynotype 0.6.2
phynotype: Clustering and Consensus Meta-Clustering
Tools for clustering, consensus meta-clustering, validation, exploratory interpretation, cluster prediction, and plotting. The package provides a clustering workflow with consensus clustering following Strehl and Ghosh (2002) <https://www.jmlr.org/papers/v3/strehl02a.html>.
Authors:
phynotype_0.6.2.tar.gz
phynotype_0.6.2.zip(r-4.7-any)phynotype_0.6.2.zip(r-4.6-any)phynotype_0.6.2.zip(r-4.5-any)
phynotype_0.6.2.tgz(r-4.6-any)phynotype_0.6.2.tgz(r-4.5-any)
phynotype_0.6.2.tar.gz(r-4.7-any)phynotype_0.6.2.tar.gz(r-4.6-any)
phynotype_0.6.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
phynotype/json (API)
| # Install 'phynotype' in R: |
| install.packages('phynotype', repos = c('https://ielbadisy.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ielbadisy/phynotype/issues
bioinformaticsclusteringconsensus-clusteringmachine-learningmeta-clusteringphenotypingvalidation
Last updated from:c13fd616e3. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 149 | ||
| source / vignettes | OK | 199 | ||
| linux-release | OK | 141 | ||
| macos-release | OK | 100 | ||
| macos-oldrel | OK | 97 | ||
| windows-devel | OK | 101 | ||
| windows-release | OK | 103 | ||
| windows-oldrel | OK | 101 | ||
| wasm-release | OK | 121 |
Exports:adjusted_rand_indexcentersceteris_paribusclusterclustersexplorefeature_importancelime_explainmembershipmetaclustermethod_usedmixed_distancen_clustersplot_biplotplot_cluster_sizesplot_clustersplot_coassocplot_consensusplot_dendrogramplot_feature_profilesplot_silhouetteprepare_mixed_dataprototypesscale_color_phynotypescale_fill_phynotypesizestheme_phynotypevalidate
Dependencies:cliclusterclustMixTypecombinatcpp11dbscandplyrfarverfunctionalsgenericsggplot2ggrepelgluegtableisobandlabelinglifecyclemagrittrmclustpillarpkgconfigR6RColorBrewerRcpprlangS7scalestibbletidyselectutf8vctrsviridisLitewithr